Data Categories


Where available, HostSeq Databank will provide access to viable data in the following categories:


Aggregated genomic information:

      • Variant counts / frequencies

Aggregated personal and health information:

      • Age groups
      • Sex at birth
      • Ancestry
      • Pre-existing health conditions
      • Smoking status
      • Symptoms of COVID-19
      • Laboratory results
      • COVID-19-related interventions.


Per individual genomic information:

      • Variant browser
      • Genomic raw data

Per individual personal and health information:

      • Participant study ID
      • Study enrollment date
      • Month of birth
      • COVID-19 lab results and date
      • Hospitalized state
      • Date of admission
      • Sex at birth
      • Ancestry
      • Country of birth
      • Education
      • Weight
      • Height
      • Employment
      • Household composition
      • Pregnancy (weeks)
      • Comorbidities: HIV, immunocompromised status, organ transplant and type, autoimmune and rheumatologic disease, diabetes, asthma, COPD, cystic fibrosis, sleep apnea, CPAP use, kidney disease, liver disease, gallbladder disease, pancreas disease, coronary artery disease, congestive heart failure, hypertension, myocardial infarction, peripheral vascular disease, stroke, arrhythmias, dementia, other neurological or psychiatric disease, cancer
      • Smoking status
      • ABO blood type
      • Rh factor
      • Home medications
      • BCG vaccination
      • Symptoms at assessment: Cough, difficulty breathing, fever, heart rate, highest respiratory rate, blood pressure, oxygen saturation, fatigue, myalgia, runny nose, sore throat, loss of taste/smell, nosebleed, ear pain, wheezing, chest pain, joint pain, headache, seizures, altered consciousness/confusion, abdominal pain/diarrhea, nausea/vomiting, conjunctivitis, skin rash, asymptomatic
      • Pathogen testing: Influenza, coronavirus, RSV, adenovirus, enterovirus, bacteria, other infectious respiratory diagnosis
      • Complications: Viral pneumonitis, bacterial pneumonia, ARDS, pneumothorax, pleural effusion, COP, bronchiolitis, meningitis/encephalitis, seizure, stroke, congestive heart failure, cardiac inflammation, cardiac arrhythmias, cardiac ischemia, cardiac arrest, coagulation disorder/DIC, anemia, rhabdomyolysis/myositis, acute renal injury or failure, gastrointestinal hemorrhage, pancreatitis, liver dysfunction, hyperglycemia, inflammatory syndrome/Kawasaki disease-like, other
      • Tests during hospitalization: ECG, POCUS, echocardiography
      • Outcome: Outcome date and state, repeat hospital visits
      • Laboratory results: Hemoglobin, WBC counts, lymphocyte counts, neutrophil counts, hematocrit, platelets, APTT/APTR, PT, INR, ALT/SGPT, bilirubin, AST/SGOT, glucose, blood urea nitrogen, lactate, creatinine, sodium, potassium, procalcitonin, CRP, LDH, D-dimer, fibrinogen, ferritin, triglycerides, IL-6, CD4, CD8, CD4/CD8 ratio, NT-proBNP, BNP, troponin
      • CT chest, chest X-ray, ECG, POCUS, echocardiography
      • Treatment: ICU admission, ventilation, NO inhalation, tracheostomy, extracorporeal support, renal replacement therapy/dialysis, inotropes/vasopressors, other
      • Medication: Antiviral, antibiotic, corticosteroids, antifungal, colchicine, chloroquine, hydroxychloroquine, tocilizumab, kineret, IVIG, plasma, other

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